New Coronavirus 2 (SARS-CoV-2) Detection Method from Human Nucleic Acid Sequences Using Capsule Networks

The new coronavirus SARS-CoV-2 is an infectious virus with a long incubation period, which was first detected in Wuhan, China, spread all over the world, seriously threatening human life. Therefore, accurate and rapid detection of SARS-CoV-2 is very important for controlling the epidemic and preventing its further spread. Currently, nucleic acid detection makes an important contribution to the prevention and control of SARS-CoV-2. In this study, a new and highly sensitive nucleic acid detection method for SARS-CoV-2 has been proposed. The nucleic acid sequences were digitized by Entropy-based mapping technique. Then, the digitized these sequences were divided into 100-unit sections using the sliding window method and given as input to Capsule Networks.10988 segments (5494 SARS-CoV-2, 5494 normal) are classified with capsule nets. With the proposed method, an accuracy performance of 100% was achieved by using capsule networks to identify SARS-CoV-2 from nucleic acid sequences. The results show that the proposed method successfully identifies SARS-CoV-2 from nucleic acid sequences © 2023, Brazilian Archives of Biology and Technology. All rights reserved

A topic-based hierarchical publish/subscribe messaging middleware for COVID-19 detection in X-ray image and its metadata.

Putting real-time medical data processing applications into practice comes with some challenges such as scalability and performance. Processing medical images from different collaborators is an example of such applications, in which chest X-ray data are processed to extract knowledge. It is not easy to process data and get the required information in real time using central processing techniques when data get very large in size. In this paper, real-time data are filtered and forwarded to the right processing node by using the proposed topic-based hierarchical publish/subscribe messaging middleware in the distributed scalable network of collaborating computation nodes instead of classical approaches of centralized computation. This enables processing streaming medical data in near real time and makes a warning system possible. End users have the capability of filtering/searching. The returned search results can be images (COVID-19 or non-COVID-19) and their meta-data are gender and age. Here, COVID-19 is detected using a novel capsule network-based model from chest X-ray images. This middleware allows for a smaller search space as well as shorter times for obtaining search results.

DPDH-CapNet: A Novel Lightweight Capsule Network with Non-routing for COVID-19 Diagnosis Using X-ray Images.

COVID-19 has claimed millions of lives since its outbreak in December 2019, and the damage continues, so it is urgent to develop new technologies to aid its diagnosis. However, the state-of-the-art deep learning methods often rely on large-scale labeled data, limiting their clinical application in COVID-19 identification. Recently, capsule networks have achieved highly competitive performance for COVID-19 detection, but they require expensive routing computation or traditional matrix multiplication to deal with the capsule dimensional entanglement. A more lightweight capsule network is developed to effectively address these problems, namely DPDH-CapNet, which aims to enhance the technology of automated diagnosis for COVID-19 chest X-ray images. It adopts depthwise convolution (D), point convolution (P), and dilated convolution (D) to construct a new feature extractor, thus successfully capturing the local and global dependencies of COVID-19 pathological features. Simultaneously, it constructs the classification layer by homogeneous (H) vector capsules with an adaptive, non-iterative, and non-routing mechanism. We conduct experiments on two publicly available combined datasets, including normal, pneumonia, and COVID-19 images. With a limited number of samples, the parameters of the proposed model are reduced by 9x compared to the state-of-the-art capsule network. Moreover, our model has faster convergence speed and better generalization, and its accuracy, precision, recall, and F-measure are improved to 97.99%, 98.05%, 98.02%, and 98.03%, respectively. In addition, experimental results demonstrate that, contrary to the transfer learning method, the proposed model does not require pre-training and a large number of training samples.

Conv-CapsNet: capsule based network for COVID-19 detection through X-Ray scans.

Coronavirus, a virus that spread worldwide rapidly and was eventually declared a pandemic. The rapid spread made it essential to detect Coronavirus infected people to control the further spread. Recent studies show that radiological images such as X-Rays and CT scans provide essential information in detecting infection using deep learning models. This paper proposes a shallow architecture based on Capsule Networks with convolutional layers to detect COVID-19 infected persons. The proposed method combines the ability of the capsule network to understand spatial information with convolutional layers for efficient feature extraction. Due to the model's shallow architecture, it has 23M parameters to train and requires fewer training samples. The proposed system is fast and robust and correctly classifies the X-Ray images into three classes, i.e. COVID-19, No Findings, and Viral Pneumonia. Experimental results on the X-Ray dataset show that our model performs well despite having fewer samples for the training and achieved an average accuracy of 96.47% for multi-class and 97.69% for binary classification on 5-fold cross-validation. The proposed model would be useful to researchers and medical professionals for assistance and prognosis for COVID-19 infected patients.

Data Shapley Value for Handling Noisy Labels: An Application in Screening Covid-19 Pneumonia from Chest Ct Scans

A long-standing challenge of deep learning models involves how to handle noisy labels, especially in applications where human lives are at stake. Adoption of the data Shapley Value (SV), a cooperative game-theoretic approach, is an intelligent valuation solution to tackle the issue of noisy labels. Data SV can be used together with a learning model and an evaluation metric to validate each training point's contribution to the model's performance. The SV of a data point, however, is not unique and depends on the learning model, the evaluation metric, and other data points collaborating in the training game. However, effects of utilizing different evaluation metrics for computation of the SV, detecting the noisy labels, and measuring the data points' importance has not yet been thoroughly investigated. In this context, we performed a series of comparative analyses to assess SV's capabilities to detect noisy input labels when measured by different evaluation metrics. Our experiments on COVID-19-infected of CT images illustrate that although the data SV can effectively identify noisy labels, adoption of different evaluation metric can significantly influence its ability to identify noisy labels from different data classes. Specifically, we demonstrate that the SV greatly depends on the associated evaluation metric.

Capsule Networks with Chest X-Ray Enhancement for Detection of COVID-19

Corona virus was declared a global pandemic that has affected people worldwide. It is critical to diagnose corona virus-infected individuals to restrict the virus's transmission. Recent research indicates that radiological methods provide valuable information in identifying infection using deep learning algorithms. Deep learning has contributed to large-scale medical data research, providing new ways and chances for diagnostic tools. This research attempted to investigate how the Capsule Networks leverage chest X-ray scans to identify the infected person. We suggest Capsule Networks identify the illness using chest X-ray data. The proposed approach is rapid and robust, classifying scans into COVID-19, No Findings, or any other issue in the lungs. The study can be used as a preliminary diagnosis by medical practitioners, and the study focuses on the COVID-19 class, a minority class in all public data sets accessible, and ensures that no COVID-19 infected individual is identified as Normal. Even with a small dataset, the model provides 96.37% accuracy for COVID-19 and for the non-COVID-19, and on multi-class classification, it provides an accuracy of 95.12%. © 2022 IEEE.

Overview of CapsNet Performance Evaluation Methods for Image Classification using a Dual Input Capsule Network as a Case Study

Performance evaluation is a critical part of deep learning (DL) that requires careful conduct to enhance confidence and reliability. Several metrics exist to evaluate DL models, however, choosing one for a given model is not trivial, since it is not a one-fit-all solution. Practically, accuracy is the most popularly used evaluation metric for capsule networks (CapsNets). This is problematic for sensitive applications (e.g. health), since accuracy is overly optimistic in the presence of class imbalance, and does not permit the exact reporting of a model’s risk of bias and potential usefulness. This paper, therefore, aims at demonstrating the usefulness of other metrics for performance evaluation as well as interpretability through the implementation of a custom capsule model. The metrics are effective in measuring the real performance of the models in terms of accuracy (93.03% for proposed model), number of parameters (≈ 4 million fewer for proposed model), ability to scale and fail-safe, and the effectiveness of the routing process when evaluated on the datasets. Evaluating a CapsNet model with all these metrics has the potential to enhance the practitioner’s confidence and also improve model understandability and reliability. © 2022 University of Bahrain. All rights reserved.

Enhancement of Hand Gesture Recognition Using Convolutional Neural Networks Integrating a Combination of an Autoencoder Network and PCA

Hand gestures offer people a convenient way to interact with computers, in addition to give them the ability to communicate without physical contact and at a distance, which is essential in today’s health conditions, especially during an epidemic infectious viruses such as the COVID-19 coronavirus. However, factors, such as the complexity of hand gesture patterns, differences in hand size and position, and other aspects, can affect the performance of hand gesture recognition and classification algorithms. Some deep learning approaches such as convolutional neural networks (CNN), capsule networks (CapsNets) and autoencoders have been proposed by researchers to improve the performance of image recognition systems in this particular field: While CNNs are arguably the most widely used networks for object detection and image classification, CapsNets and Autoencoder seem to resolve some of the limitations identified in the first approach. For this reason, in this work, a specific combination of these networks is proposed to effectively solve the ASL problem. The results obtained in this work show that the proposed group with a simple data augmentation process improves precision performance by 99.43%. [ FROM AUTHOR] Copyright of International Journal of Pattern Recognition & Artificial Intelligence is the property of World Scientific Publishing Company and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full . (Copyright applies to all s.)

Towards an effective model for lung disease classification: Using Dense Capsule Nets for early classification of lung diseases.

Machine Learning and computer vision have been the frontiers of the war against the COVID-19 Pandemic. Radiology has vastly improved the diagnosis of diseases, especially lung diseases, through the early assessment of key disease factors. Chest X-rays have thus become among the commonly used radiological tests to detect and diagnose many lung diseases. However, the discovery of lung disease through X-rays is a significantly challenging task depending on the availability of skilled radiologists. There has been a recent increase in attention to the design of Convolution Neural Networks (CNN) models for lung disease classification. A considerable amount of training dataset is required for CNN to work, but the problem is that it cannot handle translation and rotation correctly as input. The recently proposed Capsule Networks (referred to as CapsNets) are new automated learning architecture that aims to overcome the shortcomings in CNN. CapsNets are vital for rotation and complex translation. They require much less training information, which applies to the processing of data sets from medical images, including radiological images of the chest X-rays. In this research, the adoption and integration of CapsNets into the problem of chest X-ray classification have been explored. The aim is to design a deep model using CapsNet that increases the accuracy of the classification problem involved. We have used convolution blocks that take input images and generate convolution layers used as input to capsule block. There are 12 capsule layers operated, and the output of each capsule is used as an input to the next convolution block. The process is repeated for all blocks. The experimental results show that the proposed architecture yields better results when compared with the existing CNN techniques by achieving a better area under the curve (AUC) average. Furthermore, DNet checks the best performance in the ChestXray-14 data set on traditional CNN, and it is validated that DNet performs better with a higher level of total depth.

COVID-WideNet-A capsule network for COVID-19 detection.

Ever since the outbreak of COVID-19, the entire world is grappling with panic over its rapid spread. Consequently, it is of utmost importance to detect its presence. Timely diagnostic testing leads to the quick identification, treatment and isolation of infected people. A number of deep learning classifiers have been proved to provide encouraging results with higher accuracy as compared to the conventional method of RT-PCR testing. Chest radiography, particularly using X-ray images, is a prime imaging modality for detecting the suspected COVID-19 patients. However, the performance of these approaches still needs to be improved. In this paper, we propose a capsule network called COVID-WideNet for diagnosing COVID-19 cases using Chest X-ray (CXR) images. Experimental results have demonstrated that a discriminative trained, multi-layer capsule network achieves state-of-the-art performance on the COVIDx dataset. In particular, COVID-WideNet performs better than any other CNN based approaches for diagnosis of COVID-19 infected patients. Further, the proposed COVID-WideNet has the number of trainable parameters that is 20 times less than that of other CNN based models. This results in fast and efficient diagnosing COVID-19 symptoms and with achieving the 0.95 of Area Under Curve (AUC), 91% of accuracy, sensitivity and specificity respectively. This may also assist radiologists to detect COVID and its variant like delta.

COVID-FACT: A Fully-Automated Capsule Network-Based Framework for Identification of COVID-19 Cases from Chest CT Scans.

The newly discovered Coronavirus Disease 2019 (COVID-19) has been globally spreading and causing hundreds of thousands of deaths around the world as of its first emergence in late 2019. The rapid outbreak of this disease has overwhelmed health care infrastructures and arises the need to allocate medical equipment and resources more efficiently. The early diagnosis of this disease will lead to the rapid separation of COVID-19 and non-COVID cases, which will be helpful for health care authorities to optimize resource allocation plans and early prevention of the disease. In this regard, a growing number of studies are investigating the capability of deep learning for early diagnosis of COVID-19. Computed tomography (CT) scans have shown distinctive features and higher sensitivity compared to other diagnostic tests, in particular the current gold standard, i.e., the Reverse Transcription Polymerase Chain Reaction (RT-PCR) test. Current deep learning-based algorithms are mainly developed based on Convolutional Neural Networks (CNNs) to identify COVID-19 pneumonia cases. CNNs, however, require extensive data augmentation and large datasets to identify detailed spatial relations between image instances. Furthermore, existing algorithms utilizing CT scans, either extend slice-level predictions to patient-level ones using a simple thresholding mechanism or rely on a sophisticated infection segmentation to identify the disease. In this paper, we propose a two-stage fully automated CT-based framework for identification of COVID-19 positive cases referred to as the "COVID-FACT". COVID-FACT utilizes Capsule Networks, as its main building blocks and is, therefore, capable of capturing spatial information. In particular, to make the proposed COVID-FACT independent from sophisticated segmentations of the area of infection, slices demonstrating infection are detected at the first stage and the second stage is responsible for classifying patients into COVID and non-COVID cases. COVID-FACT detects slices with infection, and identifies positive COVID-19 cases using an in-house CT scan dataset, containing COVID-19, community acquired pneumonia, and normal cases. Based on our experiments, COVID-FACT achieves an accuracy of 90.82 % , a sensitivity of 94.55 % , a specificity of 86.04 % , and an Area Under the Curve (AUC) of 0.98, while depending on far less supervision and annotation, in comparison to its counterparts.

Convolutional capsnet: A novel artificial neural network approach to detect COVID-19 disease from X-ray images using capsule networks.

Coronavirus is an epidemic that spreads very quickly. For this reason, it has very devastating effects in many areas worldwide. It is vital to detect COVID-19 diseases as quickly as possible to restrain the spread of the disease. The similarity of COVID-19 disease with other lung infections makes the diagnosis difficult. In addition, the high spreading rate of COVID-19 increased the need for a fast system for the diagnosis of cases. For this purpose, interest in various computer-aided (such as CNN, DNN, etc.) deep learning models has been increased. In these models, mostly radiology images are applied to determine the positive cases. Recent studies show that, radiological images contain important information in the detection of coronavirus. In this study, a novel artificial neural network, Convolutional CapsNet for the detection of COVID-19 disease is proposed by using chest X-ray images with capsule networks. The proposed approach is designed to provide fast and accurate diagnostics for COVID-19 diseases with binary classification (COVID-19, and No-Findings), and multi-class classification (COVID-19, and No-Findings, and Pneumonia). The proposed method achieved an accuracy of 97.24%, and 84.22% for binary class, and multi-class, respectively. It is thought that the proposed method may help physicians to diagnose COVID-19 disease and increase the diagnostic performance. In addition, we believe that the proposed method may be an alternative method to diagnose COVID-19 by providing fast screening.